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Multi-treading for action #219

Merged
merged 91 commits into from
May 3, 2024
Merged

Multi-treading for action #219

merged 91 commits into from
May 3, 2024

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xji3
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@xji3 xji3 commented May 3, 2024

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@bredelings
Fix optimization flags.
dc2d904
@bredelings
Define HAVE_CPUID_H if we have <cpuid.h>
0e1ab9c
@bredelings
Run an apt-get update.
e6ac866
@bredelings
Indentation fix.
9b6614b
@bredelings
Ask for C++11 threading with --threading
850e716
@bredelings
Initial wiring for threading in action...
e177aea
@bredelings
Do the action by category.
5060072
@bredelings
Use inline declaration.
df532c7
@bredelings
Add inline functions to construct MapType objects.
360bb67
@bredelings
Construct MapType for destination on the spot.
de656f3
@bredelings
Construct MapType for input partials on the spot.
ce37107
@bredelings
Construct maps on the spot.
edeef5c
@bredelings
Make rescalePartials take an integer index.
38a3722
@bredelings
Make calcPrePartialsPartials2( ) also take an index.
faaa8a9
@bredelings
Remove unused variables.
0e3b8fb
@bredelings
Eliminate gMappedPartials and gMappedPartialsCache
f80d61a
@bredelings
Remove no-op virtual overrides.
a22ca29
@bredelings
Remove unused method declarations.
072304c
@bredelings
Add functions to get MapType for a subset of columns.
1c78eac
@bredelings
Make argument orders match CPU Impl
d34f118
@bredelings
Defer to CPU impl for updatePrePartials and implement upPrePartials i…
49ae3b6 
…nstead
@bredelings
Add startPattern and endPattern argument to calc functions.
054b0a1
@bredelings
Remove command to error out when threading.
7ff21fc
@bredelings
Use start and end partition
67bde48
@bredelings
The number of columns may not be kPatternCount anymore.
dd986a9
@bredelings
Add simpleAction3( )
29a6d2c
@bredelings
Remove call to factorial and condense code.
b830f0a
@bredelings
Eliminate call to factorial.
dec62c3
@bredelings
Add a tag to make the message more clear.
0cb70a7
@bredelings
Add space.
2ba56eb
@bredelings
Use random bits for columns after first.
e716c59
@bredelings
Simplify code.
691b627
@bredelings
First rewrite of normest1( )
17b77d4
@bredelings
Fix
834af66
@bredelings
Ensure that we do at least two iterations.
23b9bc6
@bredelings
Make itmax a parameter.
3494c45
@bredelings
Fix outdated comment.
e1d723c
@bredelings
Add assert.
0227c3b
@bredelings
Make k start at 1
170c429
@bredelings
Improve comments.
a594e70
@bredelings
Fixes for normest1( ).
695f4d5
@bredelings
Rename idx_hist back to ind_hist, following paper.
91cf953
@bredelings
Add some more commented-out debugging lines.
2103d64
@bredelings
Handle the case where tmax < t
8647f1e
@bredelings
Add missing break statement.
e7fdf2a
@bredelings
Also print out est / est_old.
94b26e9
@bredelings
Add some asserts.
46010e4
@bredelings
Don't exist if h.maxcoeff() == h[ind_best]
eaa44b6
@bredelings
Take the component-wise absolute value.
ea15fdd
@bredelings
Remove now-unneeded abs.
85fd084
@bredelings
Update comments.
e1a6e37
@bredelings
Switch to using normest1 and stop computing power matrices.
a1cef75
@bredelings
Add function for pmax.
e38fe22
@bredelings
Precompute ds[eigenIndex][p] and make getDValue2( ) const.
8d00b47
@bredelings
Make simpleAction{2,3} const.
aa60a02
@bredelings
Switch back to simpleAction2
11d38e5
@bredelings
Update notes.
c871327
@bredelings
Complain and quit if setTipStates( ) is called with action.
63985a7
@bredelings
Automatically download Eigen.
ca3fb7c
@xji3 xji3 merged commit 4d5644e into beagle-dev:action May 3, 2024
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@xji3 @bredelings